Scaffold Ga0209770

Basic Information
Taxon OID	3300027769 Open in IMG/M
Scaffold ID	Ga0209770_10000865 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027769 Open in IMG/M

Scaffold ID

Ga0209770_10000865 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15995
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (11.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

15995

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (11.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Michigan, USA

Coordinates

Lat. (^o)

43.1998

Long. (^o)

-86.5698

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000785	Metagenome / Metatranscriptome	891	Y
F009073	Metagenome / Metatranscriptome	323	Y
F017129	Metagenome / Metatranscriptome	242	Y
F021979	Metagenome	216	Y
F066464	Metagenome / Metatranscriptome	126	N
F092051	Metagenome	107	Y
F093404	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000086516	F009073	N/A	MKNYQIILTSVLSFFVATTILNGTAQQYVHFAGELNELGCAVIALTMGVLSLYALDWKGFIQFLNK
Ga0209770_100008652	F021979	N/A	MLTIENINILNSKFAGTAEWQIGEMFIGSQNYVFVIHKRVGEWTIGGVKHSELTIRLHRVKVIDRYVMETGLVKQNYHGRSAYSIDRMKTITDFTMCLDNHIKTIIK
Ga0209770_1000086522	F092051	GAG	MKSFKIREGIVHIDGVLYGQTPNELKVKGKVGTIQSIMIGNRGQFFPISGEFIDSTLKVTDDSTGIVEDTKPLKKGRKKA
Ga0209770_1000086523	F017129	N/A	MSRYNYFNDVQAYEALEEKRASIQMDPAYQAWVQELHISQSYVEPEGAIRAKLLNEQYDFSSKTTTSPIWNFLKLKGIWS
Ga0209770_1000086529	F066464	N/A	MSIMRTKGQGSVVLTSTPKGGGWASAMGWAAKYYQQNQTQKNPNFDTIGKLVIQNYAKDLGSGVFYGWDVISADEMDDVYLFQLRNRENSKLRIYITLGRELQTSDLENNLHQMYQCYMHDDDGDWEERFWLNANRINYKEFWGLVEKIVDKHHPLYPF
Ga0209770_100008656	F000785	GGCGG	MKGPIKINLDIWIIFRIFVLSIYIFMRVTNKRLGMKFDCVKLLNWAEELLGPSKCNTIAFTWDSEEESLGWYDWDNIIWINLSACKRMITVQKTILHEWTHAQQTFRWYNHYNLKLGYKKNPYEIKARENEKLVKRAYKKRK
Ga0209770_100008657	F093404	N/A	MGEQVADNRAPHSTCKLFENKDGEYYPVCQPMETLRLIRGEYHPIGSTLQYPTKWGRKKASLHLVGTKLNDAKLELENLQTELAKLERCYSDVLLWEDDSKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209770_10000865

Overview

Ecosystem & Geography

Associated Families

Sequences