Scaffold Ga0209770_10000377

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000377
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24811
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (46.15%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005633	Metagenome / Metatranscriptome	394	Y
F009147	Metagenome / Metatranscriptome	322	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F031459	Metagenome / Metatranscriptome	182	N
F038227	Metagenome / Metatranscriptome	166	N
F061802	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000037710	F038227	N/A	MIANGIALNRLFAGQAGGTDAPVLRRDVLREDEGFLWQEDGTSKLVITYGTFEFLLREDAGFLQQEDLFKIAIQAN
Ga0209770_1000037714	F031459	N/A	MQTDTNSNSGVGISLATAAAAGAVSFIPQLTQWFQLGAAVLAFVAAAIGLWKALKK
Ga0209770_1000037719	F013879	GGAG	MTPTVTVDTSRFDAAWKEYIPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAQVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGKVEAIYAKAMQQAYNDEAREIEMHIAAKLAEAFDGSESKGIVVQ
Ga0209770_1000037720	F010835	AGGA	MNGVALRTERALVDWLSAQDWSASPLGTPTCLTSYGHGAFTDPDLEDRMPDFPRIVVRSSTAVPVHPIDRTCEVDVTATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNVGDSDPSGGFTAFFATPTDFGVNDTSERARTFSRSMTIFAAANS
Ga0209770_100003773	F061802	GAG	MGARCMLEDVTPDGPMEILNCQKPRGLEALRQNKIALRAIERDTVLRFLPIADDKPSRIDGFIWNQNSGVITGSYEVKSRNYGLAKLESTFGNQWMISWSKLQAALEITKHTKLPFWGVLHLEPDGLVLMVEIFNENATWGCNVQLRDKLMDGVNERMAFLNMSEARKHRIKESNTELF
Ga0209770_1000037732	F013412	GGAGG	MRHLWSRGFGRLHSDAEVITTDDGKRFLLAVVEFEKRTLANGKPYAQRVTFRSFDPEDMDCVRMLTEGTHIMFDGDCDALAEKSSSGWWYANPRITGRIHEIIPPHDAS
Ga0209770_100003778	F005633	N/A	MRLATTIAVDKNGKSKLVSGPDIDASLQRDNFNTVSVPEGGKLILWIQGALAPKVRKG
Ga0209770_100003779	F009147	GAG	MGRQGFQLVTSTAAQTGNWSGLIPTEPTVFTSITGFQISGTWTSKTIPAGFPLVGNITGFQISSGSVVAFLARSE