Scaffold Ga0209770_10000278

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000278
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29750
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (60.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F000934	Metagenome / Metatranscriptome	828	Y
F001991	Metagenome / Metatranscriptome	607	Y
F002085	Metagenome / Metatranscriptome	595	Y
F012668	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000027813	F000340	N/A	MNWSDVLKAVIPIVVASLAWLLGEVSSFNTRLTKIEGQMPTLITPQGVPTDSPLSAEQRHKLKEEIYRDIHDLQVRTKLMEERQKK
Ga0209770_1000027819	F001991	AGG	MAIFNKNTLTQVSGFDNPIIAGELVYSQQTFWNLAFSNEGVAVDLTGATIDAQIIRRQLSDIKDTRYGLTFDISDYSPPPSPVALTITNRDDEEGTFTLVIDESAWGVISSDPQLDINAQECVGFSGRIKISFPAAGSTPAQDNIIFLLFLVRSDGVVN
Ga0209770_1000027824	F002085	GAGG	MNVITPVQNTNNIRYAQFVRVTTADEVFRFATTPAPVTVPAVDAEPFDAVGILMKVGDAQKDIKSTANETTFTLIGIDTAMLGWVLGLNVKGSKIEAWNGFFDVNGALITTGGSGGLYKFFTGYVSSFSISEEWLEDARQFVGTITVAASSIQLILQNRTAGRYTNNNSWQFFNSGDTSMNRVAFISTINYYFGKQR
Ga0209770_1000027825	F000934	AGTAGG	MSLNTILAISESVGINDQRFVGQMLSRNQRISTSEILTVVPFAFTMKPMNYLLYSENRDLLADLRYYDKSLTQYLNFGSTGWLNYIKYQGDMTSGQIASCQWQTASANKTLVLGSLPSISSSAYIVKKGDFCQVGLYSYIATSDVLRGSGSTVNIPVHRNLLAALASPVAAVIGQYGTTVSMGGSSYTGTTFPVILREYPTYSLMPITNDSFIQWSGNFVAFEAVL
Ga0209770_1000027833	F012668	N/A	MGIVRYENLTVKNVVNSTDSVGEYTTTLTDWFLTRGLVHDVSNTLRISERYRAYSDLVNITLNYTPNTKEMVDNQNLYAINWRGFDWRISDVRESNDRMKITFLCYRNDPVVPV