Scaffold Ga0209770_10000249

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000249
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31848
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (17.58%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F009073	Metagenome / Metatranscriptome	323	Y
F009333	Metagenome / Metatranscriptome	319	Y
F010084	Metagenome	308	Y
F010836	Metagenome / Metatranscriptome	298	Y
F027843	Metagenome	193	Y
F047046	Metagenome / Metatranscriptome	150	Y
F058148	Metagenome / Metatranscriptome	135	Y
F070108	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000024941	F009073	N/A	MKNYQILLTAIGSFFVGISILNGTAQQYVYFAGELNELGCAVISLTMGTLCIFGLDWKGLFSYLNN
Ga0209770_1000024945	F058148	N/A	MKLLDVSGMSVNEYCNFVESTALYTGVSVFDLNMEYCFEIGLISNEMYERAKAELLERRRYS
Ga0209770_1000024966	F010084	N/A	LDITEEVIKHLTNSVKTKIGVSSIDGVGVFAIRDIKEYEEVFPIWNYESGIYLIPNDRLDEIPNEVVDLLDKYFINDECGYKVIRLFKGFNFTFHGFSYCNSAWPDTNRVNITNDGIAMRDIKSGEEILEWYDKNIKT
Ga0209770_1000024968	F009333	N/A	MNIVRFNRHEVFTSEMMDYHSTTLRMVEDYHMNRNESWFTSLYNMLCGVWDGYLYTEMLETAKQMGLPTHITNRIQFTESFINK
Ga0209770_1000024969	F047046	N/A	MNIINVIAPSQQSVDLKSVIGKEVSENHSPTCRGKLIKVNKTTCTFEVVKSPYRSGDESRVGERYLVPISWAWNAFFF
Ga0209770_1000024972	F005879	N/A	MFNEQIFWKDGFEGECRGGIFTRAVDLKKFLELVEANENGNGGEVVGLRFDDNNLEIIIKPKN
Ga0209770_1000024975	F070108	N/A	MVFSLEEQMDIELILAEASAWGLSFEVEQTAKQFLIEGCTPVEAYEQAYNEWIK
Ga0209770_1000024977	F027843	N/A	MQIKMINANGSVWVVKREFKAESWFVQGLFANKFTAEEACEAYHVEKLLRDSNNTHFLVNEVPEAQIVID
Ga0209770_1000024980	F010836	N/A	MATSNFHNVNATHIFACSLENEWDYEDLVDNLKSELNNDPDYVDYGKTDYNELRSFPSRSLGSLRRYIQYKDFYVEVCVTAVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLPKSKATIYAKLAEKKAEKVKDSIVEKLEKIYSDYSDKLGVTAQFSNGETIYHAIA