Scaffold Ga0209770_10000138

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000138
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41391
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (35.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058094	Metagenome / Metatranscriptome	135	Y
F082584	Metagenome / Metatranscriptome	113	Y
F087098	Metagenome	110	N
F105025	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000013819	F105025	N/A	MDTHQATASLTGLLATATGLGVSMLPEIEAWLRIASLLVGIAVGVASLYAILNKKRTPHD
Ga0209770_1000013822	F082584	N/A	MVLKVKRTTVAGRIPAANQVATGELALNLADRRLYSKDHTGEVFPLVSGPGAAIFLHAVSGTTLYIGRLSWTDYPASGPAEDATAWTIYRITTNSAGDVVSEQSATGAWSNKTNLNFS
Ga0209770_1000013824	F058094	N/A	MSQVSFDPLTGTMISTTAQVAQLDSSGQVSGSMIPDEFDDVQTFPAVADFPAEGVVARIYFPADTNIPHRWDVDTLSYLPISSDADGGEF
Ga0209770_1000013825	F087098	N/A	MSNPTVQIAARSSAGIVQPVQATPDGALRVTTGFPVPLYDKFEVFKVGATNNTDYTEYSFGGTAVARIRMTYFGGVPATDNAQLKTSFVQYPPFA