Scaffold Ga0209770_10000093

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000093
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52124
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (86.30%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005346	Metagenome / Metatranscriptome	403	Y
F006344	Metagenome	375	Y
F008879	Metagenome / Metatranscriptome	326	Y
F010158	Metagenome	307	Y
F014007	Metagenome / Metatranscriptome	266	Y
F015312	Metagenome / Metatranscriptome	255	Y
F042225	Metagenome / Metatranscriptome	158	Y
F085641	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000009313	F015312	GAGG	MKDMGKIKPNTDSTGENGYPEKDVNKGVTHMDMRGAGAATKGKKFVSQINLKNNGKVRAGWS
Ga0209770_1000009314	F042225	AGGAG	MAMTLKEHAKLPANKAHGKNAKGFRAGGKTNSEMKKYGRNMAKVMNQRSPVRKSSGPR
Ga0209770_1000009334	F005346	AGGAG	MAYSNALEYLTAKLDEERTLIVEALIQGKLDEGEYKRLCGALQGLELAKNHIKDLAKRLERDDE
Ga0209770_1000009338	F014007	N/A	MQDLLIPEIDENIPLPANAAEALPDLTPEAEIEMRARSIKLIADMTGTPLCPDENDISAAREIATAHLANPKTRVDYSKYPNETMAYLAGLVAQGNCMLVDDLSELKLYVVNKLVYEVEHADSSKTRISALAKLGEVDGIDAFKKRSETTHIIKPIEEVEKELMSVLEGIEYKVLEDGKEVVSGSDG
Ga0209770_1000009342	F085641	GAGG	MTDNLLNKPNHIVSLATSCVLVSVESHVWNATVQDKQISDEVTTAKKASTDSGKFVKNLLAKNAEHKAVLNYRQTIYNWVQRCTYDWAGSQRLLPIANLTKFHTEFREHELRFNELVDEFLDKYPAIVSNMAFVQGDMFDRSEYPDVTELAHKFSVDLFQYEVPTGDFRCAIAQDLIDDMATHYNRQAKRMVESILSKQTEQLLDIMKSISYCCEVETTVDSNGEVKVRRRKLYDSTLDRARELCDTFKEFNLVADPKLEEARAGLSKLLEGVEIEKLRNSDTQRVVIKEGIDDILSKFGVSV
Ga0209770_1000009358	F006344	AGGAG	VEIEDDILDLIRALPNEINDTSTTTEMKFLTVGSVLWQCHHEIKYLRSEIARLKDDKRRKKRKEVYRVQT
Ga0209770_1000009368	F010158	GAG	MTIKVVEPEWIFPFEGMAVGDSFFIPTLKIPEMLYVIDCRAKVAQVRVKAYASSKEGHLGIRVWRTA
Ga0209770_100000939	F008879	AGGAG	MAKFKKGDAVKVQAVNPQGPVLALRMDEEGVIYCLVEWTDIEGKIQQRWFAEDELTGV