Scaffold Ga0209770_10000052

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000052
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65124
• Total Scaffold Genes: 127
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (71.65%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F014494	Metagenome / Metatranscriptome	262	Y
F019436	Metagenome / Metatranscriptome	229	Y
F073096	Metagenome / Metatranscriptome	120	Y
F078236	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_1000005218	F078236	AGGA	MAGKHIISHTETEIVLKCYITDASGGTIDLSLQTDMTKSTQSYVEPTSIPDESSGALVQYTGSRVYITELWWGCKHNKHWDIARILDPAVPTLHNHYYLVNAGYFDYTGFADRIYANKDIRLVADGPAHLIIKLRKEGWASKVENATYGAYDDPTRIGASTTMSGSPDKV
Ga0209770_1000005226	F014494	GGAG	MTTKHFECEECGTQGKIIVKGNDTRLEDIVFCPICSADIYEEDDYDEDDQ
Ga0209770_1000005234	F073096	N/A	LVLSGCSFILPRPHDPALFDSLVSTKIAVNKLSCDDKNWTDAESKIQHLKVYSELRNDPQAKSIAQLEEAIGKAKASNSKTFCESILKINKTRIDVVVDAWRGR
Ga0209770_1000005249	F019436	AGGAG	MFYGKDMVAKDFDLLINKLLEQELFLFEPMPSYKTGEKWTDEFRIRDGHTKLADGTWVTIIKVTTWVEKLKKDTEDLYTSYQTNLKEIQLLKQQKREMEYGLRVAAKSLNNSLKLTQDFTNNELQ
Ga0209770_1000005258	F006060	AGG	MMIEKGSKMLKFTNIAKVGDIIRAYDFKPCAGRDDAFVEGVVENANCTEPGFKCFKITVTADKFLKFETKASKKNRVGKIVFVPHETSFMEFDSRILNMSERG