NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209770_10000012

Scaffold Ga0209770_10000012


Overview

Basic Information
Taxon OID3300027769 Open in IMG/M
Scaffold IDGa0209770_10000012 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123577
Total Scaffold Genes132 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (73.48%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F024498Metagenome / Metatranscriptome205Y
F069735Metagenome123N
F078617Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209770_1000001220F024498AGGAGMSKVAWDYIVPVKNPADLKGIEPGKLPAHLLRPIEAGGKMHWLAAAAYNAMDEAAKAEGLELKPTSARRYISFV
Ga0209770_1000001230F069735AGGMNLQSLQRMNELLREFIGPQIEEIVSAYTSDSSNSLYFVSIPDVDTLDLGIHEMASLVARTSNVYGRVARLAGMARAQYKLIEGSYKKVYKANRVGKNEAEREANALEAAESEYTALITAEAIVNLAESMELAARIASESARKLIDKIQSMQVASAREEKGYFSEKDFNTY
Ga0209770_1000001239F004789GGAGMTLPGTYQNPSTKPCWTFCASCNRCQDKGRYTKCNSCSGRYDPLGKTDPHPEDFCDCKNGVLRWKTKEGKVIMTRFKTNPFKGEVKYEKKSEDERDWDSYVADMREKMDDPNWNPIMIYEED
Ga0209770_1000001252F078617GAGGMQTRVFLSGAIEDVQSNFKYDWRDEATSMLAQRGFKAVNPLDYALEEEDCEPKEIVDKNLFLQKSCDILLVEYRLLYRAYVGTDFEMTWAHLNDQPIIVWAHQELQHRVYLKFLATKLADTLEEAVEYISHTYPSTK
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