Scaffold Ga0209770_10000002

Overview

Basic Information

• Taxon OID: 3300027769
• Scaffold ID: Ga0209770_10000002
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.DD (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 276166
• Total Scaffold Genes: 225
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (12.44%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013274	Metagenome	272	Y
F013864	Metagenome / Metatranscriptome	267	Y
F015065	Metagenome / Metatranscriptome	257	Y
F018500	Metagenome / Metatranscriptome	234	Y
F031001	Metagenome / Metatranscriptome	183	Y
F031383	Metagenome / Metatranscriptome	182	Y
F032631	Metagenome	179	Y
F034077	Metagenome / Metatranscriptome	175	Y
F037076	Metagenome / Metatranscriptome	168	Y
F038994	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209770_10000002117	F015065	N/A	MSSTTQFKAICTQNDMRLGKNIEMKLFTLEYNYNNANFDIVSLINANIHKLLYEVNKDIIEAIEIYPNPSDSSEQNILYKFLDIGGDLGGLKTYMYVNTKIAKRYASNSNTEIIFTSKSIPFEHHSELIRQKYKLLEYPLYIQKYIYDEHKNNGVISNIQVLHMFKLKPDQETELTVAMENAIGILIKKMYFRLKVAIESLR
Ga0209770_10000002148	F031383	N/A	MEILSKLPFDLQEYILVKVMKRYKLRDGKYVKQIDKTKYKFLDYIMRPSVNKNSYNYHEDIYEDIFNSNEDKERFYYKFYIKNLHDIPIRKVSHVDDDMIDVRIEHQNNTYYYEVSIYRLKLKNDTNSTSNKILKDIYYKGSLADNYFWDFLEFSYTVK
Ga0209770_10000002149	F013274	N/A	MESIAGPNDLVPSFKIFSMLIIITIIIKIIFQYSYNENAAPSFSDVNSLTDVSLIKDEIKKKDASTLKKEITVYFKSYIFYYLTLLWTVCLMITIVSITINKYNPDKPGCMMRMSLLNVVPITLFMLLLGWIIYQNTIYYKKINSGYVAETYVTFDIAVNVLLLAQAGIMYAYINQQMLCSSEMGQYSEAMSKYGPYIAGFIALLAGGCMVLNEIILRFFTTDG
Ga0209770_10000002197	F013864	N/A	MNAILPSTNQDNTDTLAKYVVLGIFLILALVAIQYIFRNQIGMIEGLANRNSKKGGLDTDPLEDENDGDIITIAKRQEELTAKTQKSLNMDSHYNHYNKIIENMDEWVNAKIVNSLKNVSREVHGEGKMEDIIRHMNELNTMNKFKLTLEECARYIDTK
Ga0209770_10000002201	F034077	N/A	MVNSKVARRVLFNSTGPTNAIMTDTRHGGGDKKGGAIPAGTGQMRSFAMRNTIVEPAKNKAFMFRFTERLNPARHSGPKL
Ga0209770_10000002202	F038994	N/A	MTRKTVAMKSSLTSKGCHFGSMPGSAPKIGRGSWTSTAYRQNGLTCDCLGKIRFDTCAAQYQYLKDKNLIFNCKLTGGVGRQLFTKNCAPAKA
Ga0209770_10000002213	F031001	N/A	MEGYNGQPQQQEQRGLIGQVSDEMQKELDTMMDVLEEIQGQIPEGAYLRGMNALGALHKHKRTALAARRPGDILRCWQTLDEILEEDEDLYDEIMEVADDIVMELCGEEATIYADSNHNLVHRGEEKEIFDMLVNYKPEEGNAGYETSPMVLHHAIQVIMARIFDDTHHELEIVRPVSCQCGWRGAQGNWDRHITNARHQRWVNAERERTSQKRLAEARETIVARRDSGIVYLNEMHCTPETQIVTAEAIREAEAAGDRVVFMCADGTMSWFC
Ga0209770_1000000223	F032631	N/A	MFGEDGGSWYDNIFLIDILIFVFSFAFLAIAGIIMYFCYPLVMTAFQT
Ga0209770_100000027	F018500	N/A	MNINFNITKYTGVMAFYAVLTYLLFPAIAYFLFGKTLEAAGNGFIAGSVVSVVLWWMVGMGMVKGA
Ga0209770_1000000271	F037076	N/A	MRNNKINMITLDVRISCDTFWNYNFNIPIRIDDYYNPNDRNINLNIRNDDRHRSNTCEIGNIGRSDPLFLRLEEYLVDYVIQFIYDDLVQKRQNRDIPILLKKARKFHIHGRTLEDLLFPSNSTNEHVLPENIVYICTHC