Scaffold Ga0209772_10106710

Overview

Basic Information

• Taxon OID: 3300027768
• Scaffold ID: Ga0209772_10106710
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005268	Metagenome / Metatranscriptome	406	Y
F025325	Metagenome / Metatranscriptome	202	Y
F046802	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209772_101067101	F005268	N/A	LSEAGLVEIQLDEFAERIRDVKRMVIARLREMLDFDSGIQERESAAYSLGTLKGLEMKVLANAPKLPDPSQM
Ga0209772_101067102	F025325	AGAAGG	MLSDGPKQPDKTWEQLVAAASNETDPEKLATIMEEIFAALEERERTLNQPQNPATL
Ga0209772_101067103	F046802	N/A	MAIKLKIPRSRSSGGDQGRAKSRLSASDPLMRIALLGFLTAALVVVGFFAYWYVK