Scaffold Ga0209655_10001190

Overview

Basic Information

• Taxon OID: 3300027767
• Scaffold ID: Ga0209655_10001190
• Source Dataset Name: Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9723
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location

• Location Name: Calvert Island, British Columbia, Canada
• Coordinates
  • Lat. (^o): 51.62
  • Long. (^o): -128.09

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000858	Metagenome / Metatranscriptome	858	Y
F012603	Metagenome / Metatranscriptome	279	Y
F065973	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209655_1000119011	F000858	GGAG	MSGNGYLFAAYAVTWIIHITYLGTIVRRYKRLQGEIEELKKPGVES
Ga0209655_100011903	F012603	N/A	VVTVVVSSALGQSQLPSELLSEAPAKIDSMAVSPAEAPPISLPDAPAPQEAKDKVKVIDKKFIAVMAALGGAESLRFTTHKLVLDHELDAGAPWVTSVPANRHLVAKYGGIYAAELLVVYELKKPHSWLPGDKVIRKLWWVCPAVMVPIHIKNGIRSIRTQAPSCPVDECQAP
Ga0209655_100011907	F065973	N/A	MWFESNPNRLPWKGDMTAEEAAHVIERFLDGPSDSIEWCDFAETGQQYPRVERYRKRCDKLSPLVNRPGEMDEAAVVELRSIIKELRSATT