Scaffold Ga0209073_10010150

Overview

Basic Information

• Taxon OID: 3300027765
• Scaffold ID: Ga0209073_10010150
• Source Dataset Name: Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2521
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM3983 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 33.8834
  • Long. (^o): -83.4195

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010636	Metagenome / Metatranscriptome	301	Y
F045002	Metagenome / Metatranscriptome	153	Y
F085358	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209073_100101501	F010636	AGTAG	MKDLSRLLLAPALAAMLLLACSPTNAAHRGGGSTY
Ga0209073_100101502	F045002	GGA	LTAFIVAGAVGYMVYSKWAEEGLRRTEADMKSNLPLRLDQNTTLVDVEYDRTHNTYWYVIDEADQFDAQETARRVQSGVCANAENSIHNEKRRL
Ga0209073_100101506	F085358	GGAG	VTRILVALCALALAGCGGTTKTSAPAIDPRAEYQGSLDAYQACVNSNLNNVDACEEKRVQMETN