Basic Information | |
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Taxon OID | 3300027764 Open in IMG/M |
Scaffold ID | Ga0209134_10109107 Open in IMG/M |
Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 949 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029418 | Metagenome | 188 | Y |
F031359 | Metagenome | 182 | Y |
F061801 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209134_101091072 | F031359 | GGAG | MATTKKEKQYIVEQVVVTGYVIHGNGRKTPFSFNKNDLKPNDLLGIFDGVRRIFK |
Ga0209134_101091074 | F029418 | GGAGG | MTQHQVNEEKKRKFEEDIIEVAVAEYYHWVELNKATRSEKDARMFYDAMRLGVVRGINFATNQYMQSLKNFEEKKNENKTDI |
Ga0209134_101091075 | F061801 | AGGAG | MKTKPIFKTPSSPNYKGYDREIYMSEYTPINKEHYRRLRTCAVVSFGINIFLLLVMVLR |
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