Scaffold Ga0209134_10067489

Overview

Basic Information

• Taxon OID: 3300027764
• Scaffold ID: Ga0209134_10067489
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1202
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006843	Metagenome	363	Y
F019829	Metagenome	227	Y
F072334	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_100674891	F006843	GGTGG	MAFNLDNYVDVSTRLAEALKRWPDLRIQETDNQVITMPDGSTFIRCTVTVWRDVADPIPVVASAAEPFP
Ga0209134_100674892	F072334	N/A	VLRYKQVVNPTNGKIPDMSEIVETPNTQLQKVTLLVAMHDYDNDQLNAGEWLQNVLMACAEQKPTCYYGAKEYAKVMQVLSVQNCDVVVSNGL
Ga0209134_100674894	F019829	N/A	RTRQMYSDKYAETFKHFVDEVFRPSHVPAPKPVDHSILLDELDILREKYLSGTPSDEHKFAAAVITSAMAVIIGI