Scaffold Ga0209134_10007173

Overview

Basic Information

• Taxon OID: 3300027764
• Scaffold ID: Ga0209134_10007173
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3314
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F014133	Metagenome	265	Y
F051120	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_1000717310	F051120	AGGA	MSDLPKFAAWSHENLAQFSTEAYRKMQQQQETIEQLQCDFKDAMVELRKLSSSSLVNNQR
Ga0209134_100071734	F011223	GAGG	MSKIQIQLVEDEETPTVFERFWDNLMVFAKCVGVFAAICFAIGYFSSKQSQTTQCEPTKTVLARSIFK
Ga0209134_100071736	F014133	GAGG	MNHLKNVWAWFTNHWVMPTPAELIAEELIQAQRTKLRHQSSMEYHTALVAYNVARIKRLEGLTAKQEVVE