NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209134_10000630

Scaffold Ga0209134_10000630


Overview

Basic Information
Taxon OID3300027764 Open in IMG/M
Scaffold IDGa0209134_10000630 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9322
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009140Metagenome / Metatranscriptome322Y
F012211Metagenome / Metatranscriptome282N
F034503Metagenome174Y
F036200Metagenome170Y
F040534Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0209134_1000063010F034503AGGAMTKDEAHHLLNKRKQGLAVPLYLVNRALLVSGDIGMACSPCQATRVEGPSMAQGEGIRELFHPFVERDNPGLNQPNEGTQ
Ga0209134_1000063022F036200GGAMSKIKLEWQALWNAMDANPDQWIETTEKMYWEMLEVLPPRSMKGGNFLVGEADHHNSEGYPVYSCFTKFGDIYKAKKLSYKQFMEAFA
Ga0209134_100006303F012211AGGAGMPTDEEQFKYECWAIVQELDPEDIADAIGDSVALVEAIKANHVEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDAPFQQMFDE
Ga0209134_100006304F009140AGGAMRLNLTHRALLKRLSGGPRTMLEMTHSYTDNNSVSFHYQRYLPDLEQFGYVINHQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEPYDGKELRRNVFRRGCYDFLKYPSRFGDNLIYHKGEQA
Ga0209134_100006305F040534AGGAGMNTDKSGEGRILSLSTLGEPMSEEEFEDKMNRYELDQQYAEYIMEHRTVGNGEMLIRLMERGELYEDFKEHIMFGSK
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