Scaffold Ga0209134_10000048

Overview

Basic Information

• Taxon OID: 3300027764
• Scaffold ID: Ga0209134_10000048
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32896
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (89.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009516	Metagenome	316	Y
F029044	Metagenome / Metatranscriptome	189	Y
F100671	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209134_1000004811	F009516	GGAG	MARPMIYPMGTLEVGEVATMPAAKRGDAKRTSRNASQYGIRNGKAFKCRTVKGVTFITRL
Ga0209134_1000004827	F029044	N/A	MIYTQLSDDYKYDTLADAVYAREIEYFHYDFDRKNFEHLLANATDNEFAASVAERLNDTRKQMGNVEAIMSALKEQIEDQAAYDAAVVRVTAKREAKEAE
Ga0209134_100000489	F100671	GGA	MAKINYRMDAQTGKPWKIYPNHAVVLNDDGSTVTEHYDENGRLYKTTAKTVPYPDDWNIDDIRF