Scaffold Ga0209088_10051344

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10051344
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2003
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003065	Metagenome	509	Y
F009801	Metagenome	312	Y
F071972	Metagenome	121	N
F075854	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100513442	F009801	AGAAG	MTESKKEYCEFIGSKAFEDDGGWSYEVWTAAQQAVFKRLAARFAGYKDIDYTGHEIARYINFLAKQDVPE
Ga0209088_100513445	F075854	AGGAG	MPRPKPPMPLKGRQVRMSDVEWLMFLELGGADWLRKYVRKKAKLPLQHYLEFKQEEK
Ga0209088_100513446	F003065	AGGAG	MSEPSLNIWERALGWRKRQMIIKQLDPVTNQIRNNTLEEVAKEFEAMKNGGDTTASFAIYVRSMKK
Ga0209088_100513447	F071972	AGGAG	MKPIAWYDPTNGMVSTDKDSPLFTPLGQVLPLYSQRTWVGLTKEERHEISMANKPYVADIMAAHEAKLKEKNT