Scaffold Ga0209088_10047591

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10047591
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2092
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F032548	Metagenome / Metatranscriptome	179	Y
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100475914	F044916	N/A	MGKRKVDKSRIEKGLEKEEKTFALMAKKIVDAIKDEKELRAFAKISLEILYKDNPNLFADHAKLKLKKK
Ga0209088_100475915	F064403	GGAG	MINPRSKILSDLKKAYLKEHSVTLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF
Ga0209088_100475917	F032548	N/A	MKHNQGMEKAIRLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNAK
Ga0209088_100475918	F027756	GAG	MKLEDLIDRKILYLNYPINKYAIQEGKVTEISPAKMCIKINADWHLVSNIRIIELFSEKERPTLGFN