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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10045537 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2149 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003304 | Metagenome | 494 | N |
| F010983 | Metagenome / Metatranscriptome | 296 | Y |
| F039993 | Metagenome / Metatranscriptome | 162 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_100455371 | F010983 | N/A | SILDKPQLTNWKIEQAIMSSLTLPKEENETLEDYARRVVKDSKESTTKAAEHGTKMHTEMENILLGRAVSGDETLAPYIATFKKWSEENVEKTYWCEKGLVGAGYAGRCDAYVKLRGVGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYRASSENPKCACVSVVLASNDANKITSKVWDEEELYQAGIAFCAMQKVWSWVKNYTPPGMKL |
| Ga0209088_100455374 | F039993 | AGG | MKLALSWICYQIGDLISLTLMRFGYAYSIYNKMMIWSSDLDEHGKIWKNVK |
| Ga0209088_100455375 | F003304 | GGA | MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSEDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLTKLANQIKEDEAKLVELGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |