Scaffold Ga0209088_10043356

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10043356
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2213
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047485	Metagenome	149	N
F056318	Metagenome	137	Y
F097311	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100433563	F056318	GGAG	MFKHITSYPWTLGGSGLTVWGYEQKYGRPLVVNCDAKNERISMPTATKRANARLISIAPQMYEIIEKMQSEDAKALVRYMEKETDHADQGN
Ga0209088_100433566	F097311	AGGAGG	MTDKERIVYLTAALKNLTLSADRYIDDGSWIEHLSLDVEFAKGVLKATKYSKEERSIRDAVGRSIKGEKA
Ga0209088_100433568	F047485	AGGAG	MQGLDDHYSALWIANERRPTVQTEKYTITVAVEGFVQIDVEATSRSKAVDQAMEIFNDSNINIVVTDKSIADVEKWT