Scaffold Ga0209088_10026395

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10026395
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2953
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035668	Metagenome / Metatranscriptome	171	Y
F059760	Metagenome / Metatranscriptome	133	N
F077016	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100263953	F035668	AGG	MTCNNCQDGCKCARVNSVNIFSRDYKAGKSEGQRNEATRTSDALIELERSGVITNAQMQAVLDLILEKLTDAMDIP
Ga0209088_100263954	F059760	AGGA	MSNPETKEQLVSNTADAITSAIKSSRDNAVEAVISIVESYKKLQLPAFPKDAYDLGARDSIDTLLIHLNKFAEGLKQGRTE
Ga0209088_100263957	F077016	AGGA	VPTNSAEQVREFYRKQGEERERTRLIKMLKEQNVIRNCAATGKLVFVNCNTLEVLYLKEISDE