Scaffold Ga0209088_10019607

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10019607
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3517
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003786	Metagenome / Metatranscriptome	468	N
F019647	Metagenome / Metatranscriptome	228	N
F051874	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100196072	F003786	N/A	MSNLTQYQPRNSDEQAIISARSNRIANLDQKDAYKQTLNVISSVFPMYGIDGDLSFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDNDVKFYGKANMHTIGKILNGYMVYRRRIIASHDNEIAALRHQKDMEERGQKEREKLYAEFPTMIKDFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPPESLDLMTIRSHAKIIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0209088_100196073	F051874	N/A	MTTLQLIEQKIEISLQAINNLLPEGYYTTNTISSTDFGNSGYILVKKVDAIDYVVDICKIRISDHYATNRGRQDTEIMIDLVRFNIEQLISLVDRKINPSNYEQVEIRTLTNDILESNFAIGKKPFTTLSEPTFLGEITTKKGNIAHKYSWLKEDVRYSWIKKAN
Ga0209088_100196075	F019647	AGAAG	MKITKGIVKYGAGAPREGQYGPSINILVTLIDDSQVRVYGKPGDVIERYKSGQAITLIDDNGKYKVLEENAQTMPAPTGVAVIEQQIAEKPDLAAIVFEMSAIYSQAYIDIYNKINEAGVPPETATAATSTIFIQVFQKLR