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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10017062 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3809 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum → Candidatus Puniceispirillum marinum IMCC1322 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003304 | Metagenome | 494 | N |
| F020665 | Metagenome / Metatranscriptome | 222 | Y |
| F021063 | Metagenome / Metatranscriptome | 220 | N |
| F022371 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_100170626 | F020665 | AGGA | MRKRKAGKHIKLLKVEKYDAVKITVNVDDDLYEAMAEAGRQHIVKDKMACFEYALNQSLLELSREIK |
| Ga0209088_100170627 | F022371 | AGGA | MFCLLDMAGVVWVVCWFVLYSWITLSAIFCALFIIFKLIDYIRKELDL |
| Ga0209088_100170628 | F021063 | GGAG | VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIVKDHTGVPLNDALEYKNSHEVQKLLRDFKTGVIAWWCKASGVQIDNRTLLRKIKENDYVLPT |
| Ga0209088_100170629 | F003304 | N/A | DLTKPRMEAYCKRHSTDFILIDKPLTHPSQYSKSAIGNIMATKHYDQVTFVDADVLIANDCPKLSDDAGLFCAFDEGAFLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVIHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAYIIHYAGQSNDLVKLADHIKADDAKLVELGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |