Scaffold Ga0209088_10016243

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10016243
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3919
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023106	Metagenome / Metatranscriptome	211	Y
F035304	Metagenome / Metatranscriptome	172	Y
F080058	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1001624310	F080058	AGAAGG	MNEYEVELIHEPSGAHMSFIMFSETKEDEIELAKEIWADISVVVLDYKEGEE
Ga0209088_1001624312	F023106	GGA	MRISRRVTEEEKVANKIGNMVSDLRVDLELVGEYIAKSQPYVVYNRLQVIAESAKETKEGTNYGKNNF
Ga0209088_100162435	F035304	N/A	MDLNTLAEYLKITILSMEQDLENEDGADSIVPYLEGAIHISKHYLEYINER