Scaffold Ga0209088_10008995

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10008995
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5466
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006587	Metagenome	369	Y
F014840	Metagenome	259	Y
F029418	Metagenome	188	Y
F046899	Metagenome	150	Y
F050979	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000899511	F006587	GGAGG	MDNKYEGTGYTIVGLIVGCCITWGIMEYNQTQTKYKMNLKCVQGELYEEIRTNMFVKSHLQCFEQRSF
Ga0209088_100089954	F046899	N/A	VQNAKLNNFDPSARLAIQEFEAWQQKVFKKNYRKGWRFFQPDVFDRPTPRSAREAWGGVYRHDDTEKNEERNSKIMIAIVVAVLLLLSTL
Ga0209088_100089957	F014840	AGGAG	MIPFSYAIIDDEEEVIRKHRWSVKEAKWFTENNPDVKVVKLDKPKEVKEDLFQLVGECLF
Ga0209088_100089958	F050979	AGGAG	MATQQIHKSKRHANPLKTRTGKDRLKALALKVLYEMLDKVKEAGKKRAKIAKEIARREIK
Ga0209088_100089959	F029418	GGA	MTPDEKKRKFEEDLIEVAVAEYYHWVDVHKGVRSEKDARMFYDAMRLGVIRGINFATNQYMQSLKNFEESKTNGNTTDTQE