NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10004888

Scaffold Ga0209088_10004888


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10004888 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7731
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017442Metagenome240Y
F017592Metagenome239Y
F044356Metagenome154Y
F064409Metagenome128N
F065547Metagenome127N
F085065Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000488816F044356AGGAGMTEYFHPAYPRLYRYGGEYAPGLARLFGAHECHEGKAHDIVDGKCTKCGVHVRENK
Ga0209088_1000488819F065547N/AMKQNKQPLHERLGLTIEEVLNRLILFGQLNHKYKQEHGESINPKHFEAVLHATQPKEKNA
Ga0209088_1000488820F064409AGGAGMKLFKLKGVSKKYALRAAHYRRAARNQGVAGLAFDENALRELFDWESRGVGSVDKGKNGFAYGKWCVDLSVSMWVEDILKGDFCKAEFLETRIQKLHNKKKLDTITAAVFFPYADLLDRRRNT
Ga0209088_1000488822F017442AGGAVLSENASASTTTPSKRKKKSINFYDPFKRVDPKLLEQMYRAAQKEKLKQLPEALL
Ga0209088_100048885F017592AGGAGMMDDGDYGGIDEFMHYVTIAVLFLMTTVFLGAVVGLMYWAML
Ga0209088_100048888F085065GGGGGMTKQELLALLKLLSAIESAMSVNRAQLPNYLFEQIDAAVLTLEREILK
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