Scaffold Ga0209088_10004276

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10004276
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8348
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → Clostridium sp. CAG:1193 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012446	Metagenome / Metatranscriptome	280	N
F071998	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000427619	F071998	AGGA	MNASLLVTTAISKFPMAKRIAVENFTSGYDYLNMEASMNLSADTACYRWNAHTVKAIKYVLNNKPKNTR
Ga0209088_1000427622	F012446	N/A	MKKLQKEFTGNYDKVGMNKFVQIRKENNVAIYQRFNTDGTPRSYEVFIVKIVPKGAPLPNGKFVEESYEQYPGANAFGKTAFDCRDIGQAEERFGQLVIKAKDSADAKEEAAKTGVPNRGRRASGNKIKLDMTLKSGTKFTAKFLMSVLGVTQPVLFPIIKQWEKEGSIKVNGSVK