NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10004260

Scaffold Ga0209088_10004260


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10004260 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8367
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007579Metagenome348Y
F021520Metagenome / Metatranscriptome218N
F026250Metagenome / Metatranscriptome198Y
F039035Metagenome164Y
F103159Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000426013F007579N/AMATQKQINAQIGNATRELAPGTTWKFNEPGDSYACLEWMDDPALQPTEAATMAKATELAN
Ga0209088_1000426015F039035GAGMAGPLYTYSAKELAGAGNLADSVAAPSVQRPNEFTPTNPSVINTVNVGIAPAAPTVGTLNTTIQYAQAIASDSVNQFGTQSTPVVITLLETLDDAGDLASYLIQPLPKFWFGNIRIVMNGLTDAQRTTITNLDIGSQISVTKTFPKSTPSTVTQLMALEGISHDISPDRHIVTLYTNPARIYTYFILNSSTLNDDTKGLG
Ga0209088_100042604F026250AGGAGGMTNRQKQAAVAIGMAIMWGFWLMPTAEDLPDTKPATPLEWKLFIALNFVLIVYVHILNIREHQRQLRIEAKQRYWERMETRARYNHPTAR
Ga0209088_100042606F021520GAGVTVGLGGEDEIMSHDEMRTMVVVRWHDAHAATDTWTPIDAIGQDPCLVVSCGFLLPTNEGGKEGHITIFQSKTDADDVDGVLCIPVAMVQDMKVMTKNIPGLAPSK
Ga0209088_100042608F103159N/AMHTSIGISRGHLVGKFLAEIKGQRAGQSNRIDKIVAELGEADGKDLIEALNDLTVRPAQIIRALQARKIMLSGSVITRYRATRDATK
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