Scaffold Ga0209088_10004205

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10004205
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8426
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F046371	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100042051	F045753	N/A	MYCPKITYCFIGDDIRTLNERIKTIAKCYQEEDSGWFSVNETNNLVFIDEQDNLYIIHLRGRFWRKGEPDFNLDFVTLEKDGISFSFDVDI
Ga0209088_1000420514	F046371	N/A	MSENKLNFLRSQIAMFHPEWTKEQVHMEAIRVNEEANTIDDDDEGCLYCGS
Ga0209088_100042054	F041777	N/A	MKKTLLFIAMLFAGMLIGGTIDEQTRQLEQQPNTTNK
Ga0209088_100042057	F023350	N/A	VTLDQYIEGHYKKFKELAKNISRGEPYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKK