Scaffold Ga0209088_10003720

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10003720
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8962
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003626	Metagenome / Metatranscriptome	476	Y
F012573	Metagenome / Metatranscriptome	279	Y
F019827	Metagenome / Metatranscriptome	227	Y
F020497	Metagenome	223	Y
F028170	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000372013	F020497	N/A	MDKLIKLESINVWAGPLGVMPSDENNLPIMEESRSWTSLENEWFANLSVEDKQLVNEIINKNK
Ga0209088_1000372015	F019827	N/A	MATDILRGTKRKPYSSSRVRKMRGERLLIKAKKEGVTNDQVQHYLGKLQAAGHMRLGGMKSFDTKIDADVFSDGKAIKSTTIKFDAIIEKGMGERPHMTGYLTSASDSDKQYKLKGWFNEDGTFRIELVN
Ga0209088_1000372017	F012573	N/A	MSNQTNNWMEKLAKSYKLPAEQPIVSKEKISLLKESQLKIIMGRDKKDLVNKK
Ga0209088_100037202	F028170	N/A	LYKLSYMALKKLMKGLEASRKKEMEIHPKTLLGMWFHNFKMRSIEYRINDIKKELSNRKTKK
Ga0209088_100037207	F003626	N/A	MKEWIAKYQKAIVGTGAVAVLIVCYFQQKELSKLRAEQKIEVVVGGDIEKANLIDSLHDELFNAKVEAGRYELSLEHLYEVNPKAAKEFDDFMAHETE