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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027763 Open in IMG/M |
| Scaffold ID | Ga0209088_10003498 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9300 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (59.09%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009461 | Metagenome / Metatranscriptome | 317 | Y |
| F029438 | Metagenome | 188 | N |
| F037699 | Metagenome / Metatranscriptome | 167 | Y |
| F045748 | Metagenome | 152 | Y |
| F066709 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209088_1000349812 | F029438 | AGGA | MANTRKRKKINRRVVRRSPEPLSKLDVFMITKHEIYKAAKKAGFSNEVAWFFMQENNALPDWVSNDKPDALIPRIDPTDDEDE |
| Ga0209088_1000349814 | F037699 | AGGGGG | MNSKTLAAINSYARSAFVCLATVYVTNPSGSFDDIWKAFLVAFAAPLLRALSPSDTAFGRGSKE |
| Ga0209088_100034984 | F045748 | N/A | MLFHEKAGFDAGEEHVVVMCVKCHNTGVKARIEAITDKAVVRCTKCGAWKMESGNCYTLCKKTNALSV |
| Ga0209088_100034985 | F066709 | N/A | MANKSDWDLDLRFGQEGEVAANALLTAPIETVEVKRDRRWKDTGNLYIETDCWSDVRQEWYWSGITVTKATHWSFVLEDILITVPTDKIKLAVKTYGIFKEMNRPEYSTKGYLITVDNLCRVAFV |
| Ga0209088_100034989 | F009461 | N/A | MKINGLTVLWFMIATGLIAYALQLLKRESYNSGYWRGRAIGWESHRRLTNIQKKSDEVFDYEKN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |