Scaffold Ga0209088_10003417

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10003417
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9416
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F012447	Metagenome	280	Y
F013987	Metagenome	266	Y
F023328	Metagenome	210	N
F030061	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000341712	F013987	AGG	MTKEDKRARILPALDLAIQEAQRKGIINDLDLAGIAMAYNLAGYLDNAELTPTELGKLTGQLQAILDKYGLSLFGRKEKPELLEGEDPLEDLRKLNPENSDHTTDSPN
Ga0209088_100034172	F023328	AGG	MTVYTPTYRVTIAGTVQTSTTLEDATITYGRNDFFESTQPSYCNLELLNLDGTSPIVNLLDTIVIEVTDTSGTYVKLFTGEVSGVYNRFAGAGAVGKPNTLQIQAVGALGLLVKRYAGSVAYPEELDGARITRILEETLYTAWEDLSNTLTWNDISVTETWANYGVQGIDTIDAGRYEVLARSAQVEQAYNLTDVTQQSGLGYLYDTTDFKIGYADAERRSENYAANLIELDADLVNADIQTRLQTADIVNSVVIQYDDPVQEVAAQNDTSINSYGLLEEVRSTILAQTADATEQATNFVNYRGTPKASLEEVTVNLANSNMTNTVRDNLLGVSMDTLLYLDNIPVGLIVEGSFEGFVEGWTWTLGRKNLELTMSVSNSIYSTLDVQWEDYNSSIQWQNLANDYRWLDVI
Ga0209088_100034174	F012447	GAG	MAKAIQIVKVDKDYRGLLAALNKMDDIAKNDMKQIARSLALRAGAYAKASAKNSPYNPKQAVAVAESITFSINDKAPSFSIGGRRKVGASAFTAGYVIMGSEFGANQYKQFPRRSPRQGRGNKGWWLYPSMSAFQPTIAREWLSGYEKIRDVWKAGI
Ga0209088_100034175	F008616	AGG	MLKLKIRWELETGEVYEEWTRPNELAQAEKELYNNRSIIKILSEESSPSNQLLLFLGHKIQQRVTKKNESIDTWKPKVTDIAAVDFETANFTKPVQSGE
Ga0209088_100034176	F008811	AGGA	MATTILSGRSLTLTIATVQYAEQILDSAINFDTERLTFDTLAGKAFKYIDSNVTLDLTFLNDAGKTSPGSLYKALWDATESAPDTVLAFVLTLTTGISLAGNVLPVYPGISASGSDAQTCSVSLQVVGIPTEDLT
Ga0209088_100034177	F030061	AGTAGG	MPLSTLRSDLKTALTSNTNYSCYDHVPEIIIPPACLILASDPYLEPMVIGNSKNYYVRLTLEVVSTTYSNPSALKNLEDDIETILGLIPLNFIVLSVSSPRIRSTNSTDLLTAEIQLQTAYTG