Scaffold Ga0209088_10002690

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10002690
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10769
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (48.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F004546	Metagenome / Metatranscriptome	433	Y
F035757	Metagenome / Metatranscriptome	171	Y
F102562	Metagenome / Metatranscriptome	101	Y
F104427	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000269012	F004546	GGAGG	MPKEEEFPFDQFPWKLMHKDGKDGKETRKCYFQSEDHMKKHITRYNLKKKDYTIGYKYE
Ga0209088_1000269021	F000345	AGGA	VTLGCFLTMTEKQPNEFGKTLQEWWDSDACKELQKASEESVQKAVGKYNMLSEEDKYDMVQAICYIMCKSESEGVSHRGLMRELGIYPAGFWVDHLMDVHNALWSYYHDQKKEQELKNDVNNTRDFLKNKNETPNESGDATGTN
Ga0209088_1000269028	F000744	N/A	MTEDFVKLNVHEVGILLSALELLSVSEEKLIARDYGSAPALYDKLYSIYSKMDTSNTRLRYDFTPSF
Ga0209088_1000269031	F104427	GGA	MYNKNMNNEDLQSFIEAFDDFMKHFETEELYYEGRKVYENHRAEAQRIQEQEIEAKAAELEVTVDYYIAEFM
Ga0209088_100026906	F102562	N/A	METTDAEFLKQTATKVANILHMPLGDIEPIKLIQMVVSLDILLGGDKELMIHWVNTHNKHLGYCPGAHLTDARMDDTLRYLDAMVEH
Ga0209088_100026907	F035757	GGAG	MNKYGVVLSSLVDGATVSIQILVESEMSASQLTTYYKCKSITISDVYVEQL