Scaffold Ga0209088_10001831

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10001831
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13445
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (41.03%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F011914	Metagenome / Metatranscriptome	285	Y
F016774	Metagenome / Metatranscriptome	244	Y
F020860	Metagenome / Metatranscriptome	221	N
F025679	Metagenome / Metatranscriptome	200	Y
F032572	Metagenome / Metatranscriptome	179	N
F035215	Metagenome / Metatranscriptome	172	N
F048101	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F082109	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000183112	F048101	AGGAG	MKKKIKTKKFKNTKDFLKTCSEDEREYIYDLYNNASVSDLIDLLFEYLPAHNAIKEIKGYREEVKEEMEWDDAEAKKLNKRKCDCDFVGCQGC
Ga0209088_1000183120	F011914	N/A	MITDNQIKAMSENELAYLYYALNTEWTSLNMGYDFNWYILKAFKNNTIQKILNKHSANLTDENKGITIEILKKLEANI
Ga0209088_1000183128	F032572	N/A	MTTYKYIADYINKPTIFCYILDRVVNNNPYLFGGEYNKKLLNKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
Ga0209088_100018313	F016774	N/A	MIQKLLWRNGRKKYQMKSNKIKLLSEHLTTLNYWRDQLLALERTHYNRDYEKERTCRNMINKYLDDVLDYNKNIKKNTKN
Ga0209088_1000183130	F025679	N/A	MTKTFKIGEYALGGTIRVSIPKTLTTIKIDIIDSNFKTKKLINQYIYYSFDRIRMERDLFQITSGYWSDKILEYISKTMKQSGEWIGNYCKI
Ga0209088_1000183132	F035215	N/A	MSRKKRRTKMKSSEQIAKEISDRIAEYKVLMVEHNNNQSAVDELESAIHELDHLLRWINE
Ga0209088_1000183133	F010897	N/A	MKLINRTFLCSDKLKEIIKWCMPEGVFLKDIRKIDFGNTKRGWHGRAWGSMRVHVGVPEYKKYVRVYKSGGFRGYLSIHTYSWEESLIELISHELRHLYQFKKGKFYHGIKKIRKYNIGTKAKLCEVDASLYAKRKVREYRKSSLIYSVI
Ga0209088_1000183137	F020860	N/A	MEKITKIKKLAEGGYAIYAVDPKTKSEMQVGYIGDKLDIKGWLPEGVKIENS
Ga0209088_1000183139	F010746	GGAGG	MTYKCSVSGEAISPERVEALKVLGVPESKWTNIKHSQVKKLRAVYAGDDGSNDIVICDAVDGGSLF
Ga0209088_100018317	F082109	N/A	MWTPIEIFALTFLLNHSPMTSERLSVKEVIQNREAQSLIESVGLRNDSQTN
Ga0209088_100018318	F062446	AGG	MIPKPIRIIGFILYCLFWLALAYLFIGCANVSYKTIPDGMSEDAQDYPTKYNTMDSPDGRRNPNAQVNIFGATY