Scaffold Ga0209088_10001215

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10001215
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16790
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (25.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F071242	Metagenome / Metatranscriptome	122	Y
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000121514	F027518	N/A	MNTEIEIALIHEQLQGMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLSGIATAAGVIGGLIVQLIIKAL
Ga0209088_1000121517	F021113	AGGA	MNRNILAAILLFIGTSILWLVICWHWWGCTDKKSVQENVQKQDSVINYNAGEYDRLLQEQIELYKQLRTYEDAQLTAKTTYKRTRSTIVIRDTITRVDVIHLVNSCDSVIASDSLVIDNLKEQLNIEEEKINNLQETTGAYEQKEDILTEEINTLTAENKKLDKQKKRRNHALVFTSSVAILSTFVLSILF
Ga0209088_1000121518	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIQFSMKFYVEESKIKLTEQTST
Ga0209088_100012152	F071242	N/A	MEATSKEQVQNKAGAMVACLEFIKLNMKSNSEFGRIANGKRKLKLWKHYGMKVIRISVNVAFWIFIIYNLLF