Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10001159 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10001159 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17260
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (66.67%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

17260

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (66.67%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F004010	Metagenome / Metatranscriptome	457	Y
F012758	Metagenome	277	Y
F033721	Metagenome / Metatranscriptome	176	Y
F090072	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100011591	F012758	N/A	MDEPADSTAPEKAKNGREIFTKELAEEIISACGSGFTLEKAGALVGVNPSTIKTWASRKPDFARRVESARKKHELSLLRDIELAGQKSWQAKAWMAERIYNHAQPSARLQVSQDVTHGISSNLASLLAGIAGRKKTQVIDAKAIEV
Ga0209088_1000115910	F003962	N/A	VVLNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFENHQKALQSLHDACPAVWDQDEVDDLES
Ga0209088_1000115917	F004010	AGGA	MPLGKDVSKNMSELARDNRRKGSERGACGKPRSREQMIAIALSAAGKSKPRKFRMRSGS
Ga0209088_1000115923	F003304	N/A	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHDTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIANDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIQADDAKLVELAR
Ga0209088_1000115924	F033721	GAGG	MRWIKKEFDEDGKPEWAVYIDEAGEGNEEDWSHFDTYPSRDEAVEACWKFTWEDYDCSDK
Ga0209088_1000115925	F002009	AGGAG	MTAPTIQEMGLAAQEIVWRVMGKGSDKSGYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRCLFTLAQIKKEVTRL
Ga0209088_100011598	F090072	AGGAG	MTEDEIIKAYLSRLGKKGGSVKGPQKVRTKEHYQKAVGIRWAKYRERKQTEAQASKR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10001159

Overview

Ecosystem & Geography

Associated Families

Sequences