Scaffold Ga0209088_10001144

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10001144
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17396
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010449	Metagenome / Metatranscriptome	303	N
F012569	Metagenome / Metatranscriptome	279	N
F014827	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000114411	F012569	N/A	MSRALDKFQGQYGFSVGTQGTAPAGYWAIQMLADTTFSAISGRFDGTLTGVTIGSGNIIYGEFNSYTAGTGKVIGYIAG
Ga0209088_1000114420	F014827	N/A	VLRAILEIIAAVFRIIPGWQQKRTQNFENEWRDNRKAIDSDLSGESWWMRNNDTSNPHDRDS
Ga0209088_100011448	F010449	N/A	MEVRLARMEERQVQLYSMVERSLANYADIANKVNALEHLRTKILALSGVIGLICSMAWDVIKNRNN