Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10001099 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10001099 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17879
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (81.08%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

17879

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (81.08%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F002099	Metagenome / Metatranscriptome	593	Y
F005320	Metagenome / Metatranscriptome	405	Y
F026266	Metagenome	198	Y
F045754	Metagenome / Metatranscriptome	152	N
F054861	Metagenome	139	Y
F073554	Metagenome / Metatranscriptome	120	N
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000109917	F005320	AGGA	MSIDSMKPVKVAGEIFWSNWMNTFNTKFNEDNKKYECTIGNLSDAACEKLKELGINIKNKESMGNFIVAKSTYLFTPVDEEGNPVDIAKMGNGTKCHAVISSYRHKMSAKFGAAPSIKKLIVTELKVYVPEGAEEAETADDIL
Ga0209088_1000109918	F088893	AGG	MSKTIDKNQILFSVEGENFKIKIGEDLDLEEVYTVLLSALVYLEDLASGNTAHPSQELH
Ga0209088_1000109924	F001143	AGGAG	MSAWLIAVVGVVYTVVAIDLIVKGNTGLGIAFVGYALGNVGLYMEAAK
Ga0209088_1000109928	F045754	GAG	MNIDENKPWPFPSHFGDAAEDDKLKADCLELLQDFTAFQLRGEIYYGYLDVKALKVIEELRKDRDETKSST
Ga0209088_1000109929	F073554	N/A	MSIGMYGVDEDDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVSEAVLHKVHSGYVVAKENEDPLAW
Ga0209088_100010993	F002099	N/A	MRKLIVVLLSLGLVASTPSSSSDNCSVREFYGIAYTVHNPTERHQQMSRWLTNHQTLCKSTDMVVIWNNLSEWAGSADSAELRHKVVIAYKNAVLREKQ
Ga0209088_1000109933	F026266	AGGA	MTIDTITFHFVGQLEDSGAIVTVQCQIDEDGDCRDLDSAMYQGIDVLEVISNDQRENLQWEASKAYKAENYEQLTIAHDHEHTLEAIYGLSKPSFNIR
Ga0209088_1000109934	F054861	GAGG	MNTKLLKHSRELFKSYDVPEHVRRSYRLKWVRSIRHLGDNWLLANHVQRKEQTQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10001099

Overview

Ecosystem & Geography

Associated Families

Sequences