Scaffold Ga0209088_10000826

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000826
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21022
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (39.39%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F005024	Metagenome / Metatranscriptome	414	Y
F005633	Metagenome / Metatranscriptome	394	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F017997	Metagenome / Metatranscriptome	237	Y
F019637	Metagenome / Metatranscriptome	228	Y
F032255	Metagenome / Metatranscriptome	180	N
F037116	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100008261	F019637	N/A	GERETPIISSDQVVNTFTKMPNQIQFLVDQFGLANTAWFIRLMKSGTTPEQIVGSLVPSNYDSRRDGVFRALQFAGNLPDSMMPQEIKDALQP
Ga0209088_1000082611	F002843	N/A	MIVPVDIVAVQCNQNNSLFVTTGIDYDNSGSIVGSEITSQYTMNPGDDLTGQPVEVVNIANALWTPAVVAAYKLANPVVEAVQPTE
Ga0209088_1000082612	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFIPILTDWVRLITALIGLVCAIYGAYRLFRSK
Ga0209088_1000082614	F017997	AGAAG	MNVIEQIVTAILKWLTGLAKTQPTAEDAKPDPELKQKLLDRIDKSGI
Ga0209088_1000082616	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDTGFIFLENTDRIALTFCKPKPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0209088_1000082617	F005024	GGAG	MTVDSGKFDLAMKQYLMTTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGAPAGNLNRKSKKTGKRIGTSRILRRVHLIVQAKAAKNPTVNLNGGHGLYGKAMKAAASALMKRSIASVGYLRSAVVKSIRIYNRGFTQFQSPKWKPLSKPASYRAPKKTNSALVAMANEYGLPQENVGIHKGTVAHGFQAVPGFNPTAFVSMRTGVADNQYNRVAQIYNEAMQKAMDDETTEMINHMTEALLANGKVLEDNGITIK
Ga0209088_1000082618	F006107	GGA	MNAAALRAELAVADYLAAADWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAPSNDASGPFTAQFAAPLDFGGSSISNRSRTFTRTFTLYCSATI
Ga0209088_1000082619	F032255	N/A	MANSQGLAYQFGSPASVTMFDTDNTTAVFTALASIESYDLTHEADTEEVRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVGITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTAAAVALNV
Ga0209088_100008262	F010611	AGGA	MNQKDYRRHSGLTSGYVTDLVSRGMPLDSPEAADAWRAKNIKARTKRLPIAAPTTATTAIEQEGPYRPIEAESPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKT
Ga0209088_100008267	F005633	N/A	MRIATTIAVDKAGKSKIVAGPEVDAAAQRTDFNTAKIAEGSKLILWIQGSLAPKIRKG