NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000799

Scaffold Ga0209088_10000799


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000799 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21382
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (72.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010601Metagenome301Y
F018508Metagenome234N
F021491Metagenome / Metatranscriptome218Y
F023804Metagenome208Y
F036595Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000079916F021491N/AMSVQKKIEEMVLQYILKTEGQARIMSPQDVAKLARDAMHKGAMLGYDAGMKMSLRAHGNELEVAELTVKELTERVKELEMQMIAQQ
Ga0209088_1000079918F023804AGGAGMLETLFRFKCEVEGVTLVCFLEHEPAEFNHGEAPDFPECMNLVNAFCGDIDIAHLLMQSIADHICEEALTQFNSESDE
Ga0209088_100007992F036595AGGMIEFLKQLILAKVNRPKPTVEEVEVQVWAFVVKSITIMVLGIAFGTLWLIGFEKQETELAPIDAIFLEILKAIAFMGVGTMGGISGRKASNAIAKAIVGEDDATK
Ga0209088_1000079928F018508GGAGMVKKSLSKALGGLKQPEFPMNTFEVFMNSRLVELSVVKREHEKRWGINRLIELVDSEFRIKVWRQAERVFEASVSRDEVKLDRAVNGMIKAYAALETWAVENGVPEMPAITAVEHEMQDGSVMVVVGTHHDATLYQQFRPDVQNRHIWTMEELELVMESPVIKDTMKIKALMPCAALVRLDKDAKEFPLGGATGFDDVKSDELEASSLPKVFDTSKMRKNRVNRALEEI
Ga0209088_100007996F010601AGGMLSQWVNGDLELEQELRAGKVPVCIREDYTVYLEFFRGNLWIHVEIKRWSSGVKKDCLKSIALIENLIGKPIVALIREEDIKLVRFAKSFGWSEKCQISLLDGSKAFIYTNKV
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