Scaffold Ga0209088_10000619

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000619
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24679
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F048114	Metagenome	148	Y
F083753	Metagenome	112	Y
F083928	Metagenome	112	Y
F102518	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000061913	F102518	AGAAGG	MKKTVFTILIICSMGWLEGCSTNTRVVEEPTFTSQTLVLDKKIQPLTRMEQIDAIKECQEVNLRPRLVYGKRMVNGVSSEIVLDVICANKYAF
Ga0209088_1000061919	F017969	N/A	MIQVIYIPILFVCMNNHCEFMQSMKYFTRESECRSSVEEQKENLRKMSLKGNAMITQLEGTCITLKNGML
Ga0209088_1000061923	F083928	GGAG	MNVLQYLNSLRPAIPMSAERPCTVMSNGELRRHMVQGAVLINGETVTPDEPMDFPVFSLVFFPNSKNRRTTIV
Ga0209088_1000061930	F083753	GGAG	MKAAESQYINLGYKYEKAKSPEAGQAAAQAIRTFLEAEAIEDRADARYLVERGRQEAREG
Ga0209088_100006196	F048114	N/A	LNAAQEGVGDDEHRHRCLVRWVIKKRLEDRDGAHNWLNGYRDHMGKQHKGWNDLHPKSRLEADVREQWAKGNRGNTGEWK