Scaffold Ga0209088_10000560

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000560
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25957
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (31.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008936	Metagenome	325	Y
F025680	Metagenome	200	N
F057894	Metagenome	135	N
F059603	Metagenome	133	N
F065376	Metagenome	127	Y
F065768	Metagenome	127	N
F070850	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000056019	F059603	GAG	MSTEEKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHESFRLHLMNANPESIVYQYYLKRCGKWIKTLKLHNQKLIPIFVTNGTED
Ga0209088_1000056021	F057894	N/A	MAANRWRSGYMRLQDDTFTGYLTPIGQVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGALRDSEEGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL
Ga0209088_1000056026	F065768	GAG	MSVCSPCYDAGSYVNACLTEFSFGTLPADDTEYIVWLQHNATKKIMQFTATTDAEGYIIIEGIQLDPLQGYTIWATLDGVQQDITVDGDIYTCLSFSAASVGQSPVVIP
Ga0209088_1000056028	F025680	N/A	MKYITGLKGRLRSLLGSKKTTHNLVEVFTHEGHTYYRFPKEVNLPLERFSMSMSLLERLSSGVSGAEMELILGEMEKALGAGLSNPKNAALIGAYIHVIRERHDTVIHRDILLNIAATWIIRDDEDPNIVNSDIHNYKLELFEQLSKGGAKDFFSSLGIDPLMPLLTMSPEDFQILWEYNLVQQRNLKESLFRLNSHRESGRKKQATT
Ga0209088_1000056034	F070850	GGAG	MTEELSQTTQSITPSTGVVLLAFGKPQYYWAAFNLAFSIRKHSPNVNITVLFDDPIKGLSNCPDLMQYINNIGHIDADDIYTNKKLDPGKVKVNLYKYLPYDCNLYLDVDAIALKDIQPMIDELAQSGKDYISHCVGYHTIDKGRDFKEMQWAWADKLWAHFNLLESYVMPAINSSMQWIVKGSQAEAIYRTAKDLYFNHPMEVKDLRMKWGGGQPDELYMNVALAIHGIDPALKKYEKIQGSEGGMIHFSMQRGLNFQDIIDNYYLQSYYGGAGFTPIFYINWLDRMLNAEFKAIGKRHIYLISRIAQNKYADGKR
Ga0209088_1000056037	F008936	N/A	MASFDELVKRKIKLLETVPEDIATAAEKAQREAWRKIAPLLAEMDVDADGNIAQTENNIRRIGGITEELNKVLAGGEYKAAVQSFLASIDEGVQLTDDIAKKIDSTFQPDNVQKQLLAISKQNAINAFFGSGLRQNVTVPFLEQLTANVAARAPLREATKALQGVIEGTDANDGRLLANVRTTANTAQAIADRSYAAAVNEELGIDYFQYLGGEIPTTRPFCQHREGEIYHRKEIEAWGDGKNSAGINDIRNGTWDGRIDGTDSRSIFTFVGGWNCRHFLVPVIKQRVPASVIARAEAEGFATPPRPKGGAEALTA
Ga0209088_100005606	F065376	N/A	MNAANIENLSEFYKALNSTEVLRAQGMIAGAPQIIEDKLTYDMSAESIKAANDAIKHIETNRKMVTLPLDAFKKSIMDVERDATASLKAYIDHRKQMMIDYSNELERKKAEADAKIAQDAADALMSASSSDVSDIFATFTDATTTTTLEMDHTKNIRISKKAEIVGEVDWMTLLWTLMQAEMFDVQELLRKLPKAMELTKIDQIKGIELTEVKTQVIR