Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000519 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000519 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27018
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

27018

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006547	Metagenome / Metatranscriptome	370	Y
F011153	Metagenome / Metatranscriptome	294	Y
F012976	Metagenome / Metatranscriptome	275	Y
F019478	Metagenome	229	Y
F022886	Metagenome / Metatranscriptome	212	N
F030763	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000051936	F030763	GAG	MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL
Ga0209088_1000051937	F022886	N/A	MIIIRNWDKLTRLFRSQIDIEDFEMHYLIKYFYPTLPTPEYYTITLSRMNPPQQDHPHKDEYLMLCGESEYWLTKDKLKDVDSVYEAIVDVVVRHNLKVRV
Ga0209088_1000051940	F006547	N/A	MKCIFIFLLVPTLLLGQVSDTSFQMVYYQKSLIKKGKVELYGYTSYDLWWADESGIGFLYTIPNKRKKKTKRK
Ga0209088_1000051942	F019478	N/A	TMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRMDGDGDWTYSLNYIRCNQHLITAKWFEDWKNVTKTFGDALKKQF
Ga0209088_100005196	F011153	AGG	MDNIQEVLNAQNKRILTLQILLESLVDELIETKKIKESKLDDRFVTKMNWVNEELTKAKEEASIDYLKGQIFGGKMGEA
Ga0209088_100005197	F012976	N/A	MAKFIFIIEEEQNREASKIEFEVPNDMDVWEYKRMCMRMAGAMGYTSLSVKKAFGQEYLRNVEEELNTIFKNAYTGSLTYG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000519

Overview

Ecosystem & Geography

Associated Families

Sequences