NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209088_10000519

Scaffold Ga0209088_10000519


Overview

Basic Information
Taxon OID3300027763 Open in IMG/M
Scaffold IDGa0209088_10000519 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27018
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (16.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006547Metagenome / Metatranscriptome370Y
F011153Metagenome / Metatranscriptome294Y
F012976Metagenome / Metatranscriptome275Y
F019478Metagenome229Y
F022886Metagenome / Metatranscriptome212N
F030763Metagenome / Metatranscriptome184N

Sequences

Protein IDFamilyRBSSequence
Ga0209088_1000051936F030763GAGMLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL
Ga0209088_1000051937F022886N/AMIIIRNWDKLTRLFRSQIDIEDFEMHYLIKYFYPTLPTPEYYTITLSRMNPPQQDHPHKDEYLMLCGESEYWLTKDKLKDVDSVYEAIVDVVVRHNLKVRV
Ga0209088_1000051940F006547N/AMKCIFIFLLVPTLLLGQVSDTSFQMVYYQKSLIKKGKVELYGYTSYDLWWADESGIGFLYTIPNKRKKKTKRK
Ga0209088_1000051942F019478N/ATMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRMDGDGDWTYSLNYIRCNQHLITAKWFEDWKNVTKTFGDALKKQF
Ga0209088_100005196F011153AGGMDNIQEVLNAQNKRILTLQILLESLVDELIETKKIKESKLDDRFVTKMNWVNEELTKAKEEASIDYLKGQIFGGKMGEA
Ga0209088_100005197F012976N/AMAKFIFIIEEEQNREASKIEFEVPNDMDVWEYKRMCMRMAGAMGYTSLSVKKAFGQEYLRNVEEELNTIFKNAYTGSLTYG

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