Basic Information | |
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Taxon OID | 3300027763 Open in IMG/M |
Scaffold ID | Ga0209088_10000519 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27018 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (16.67%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006547 | Metagenome / Metatranscriptome | 370 | Y |
F011153 | Metagenome / Metatranscriptome | 294 | Y |
F012976 | Metagenome / Metatranscriptome | 275 | Y |
F019478 | Metagenome | 229 | Y |
F022886 | Metagenome / Metatranscriptome | 212 | N |
F030763 | Metagenome / Metatranscriptome | 184 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209088_1000051936 | F030763 | GAG | MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTKKSITMAILREPMMDEAEYDTAYRISLVEDDKKPSNIIDDVIYHSVLEDMELFGESLTHYLNTL |
Ga0209088_1000051937 | F022886 | N/A | MIIIRNWDKLTRLFRSQIDIEDFEMHYLIKYFYPTLPTPEYYTITLSRMNPPQQDHPHKDEYLMLCGESEYWLTKDKLKDVDSVYEAIVDVVVRHNLKVRV |
Ga0209088_1000051940 | F006547 | N/A | MKCIFIFLLVPTLLLGQVSDTSFQMVYYQKSLIKKGKVELYGYTSYDLWWADESGIGFLYTIPNKRKKKTKRK |
Ga0209088_1000051942 | F019478 | N/A | TMFWNRRFTCLQVHETDTNYRFQFDDSEVPSRYVWIEVSKIGRMDGDGDWTYSLNYIRCNQHLITAKWFEDWKNVTKTFGDALKKQF |
Ga0209088_100005196 | F011153 | AGG | MDNIQEVLNAQNKRILTLQILLESLVDELIETKKIKESKLDDRFVTKMNWVNEELTKAKEEASIDYLKGQIFGGKMGEA |
Ga0209088_100005197 | F012976 | N/A | MAKFIFIIEEEQNREASKIEFEVPNDMDVWEYKRMCMRMAGAMGYTSLSVKKAFGQEYLRNVEEELNTIFKNAYTGSLTYG |
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