Scaffold Ga0209088_10000455

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000455
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29156
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (65.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016520	Metagenome	246	Y
F023542	Metagenome	209	Y
F029042	Metagenome	189	Y
F085366	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000045513	F085366	AGGA	MQKLSKDMAGYGNTAKMAGNPTPDMKSKGSVKNNIPNAMSNKMGADNKCEGGKSMGVCYTHDRKSSQ
Ga0209088_1000045522	F023542	N/A	MDILEIAIKEAGGTGRLAYLLDLKQNVVSNWRQRGVPKGWEQVLRIKFKKQIASAGKVV
Ga0209088_1000045531	F016520	GGTGG	MTPECPNGLFEFACEVEGVDLVCFLEYFPAEFGSKDSMGLAYEPDQDECMDLVNAYISGTDIDIGHLLMQSLVDHITTTALDQNHD
Ga0209088_1000045536	F029042	AGTAG	MLDPITISAAFALAKSTIAGVQEAIQMGKDLQECSGDLIKFFEMRDTVARAATEDKGKKRSDMGQALDTVMQAKALRDAEKKLKEQLIYSGQGDVWEAIQAEYNMIVATRKREEREAEAAAKNRREKMAEMVETIFYGLAGCIVGGLICWGTFEFIVYKMKG