Scaffold Ga0209088_10000342

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000342
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34013
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001097	Metagenome / Metatranscriptome	780	Y
F012435	Metagenome / Metatranscriptome	280	Y
F014143	Metagenome / Metatranscriptome	265	Y
F029105	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000034219	F012435	GAG	MSDIDLVKYGVLWQKVESMEAKIDKMETQLETLIELANKGRGGFWMGMAFVSATSTVLGYISHYWSK
Ga0209088_1000034224	F000166	AGG	MANIPTPQDAALFAQSVKKWQQVLSLGDWRIEKGIKPAKAAMASVEFTATARLAVYRLGDFGAEKITPESLDRTALHELLHIFLHDLMCVATDPKSSDEDIEMQEHRVINLLENLLSKDSNGQS
Ga0209088_1000034232	F014143	GGAGG	MNIRYLTQVRRIFSQYDAPPEVIRSYQRQWVRSVRQLGDKWLVAKQIERIEQ
Ga0209088_1000034233	F029105	AGGA	MKHNLQHNFQDVVSYDNGETVEVVTVGYDHLPEEINYPHAPDYKEMFDVFVFANDKDVTYDIPSEEYDRLFEEAKRHFYTSCEAV
Ga0209088_1000034238	F001097	GGAG	MTFNWPTNDSERIRTLQGLRSPRVDEAVQGQEIDDWLKESVALVAGSVAGLAANQRRVRYFGFETTHEQDSK