Scaffold Ga0209088_10000341

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000341
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34037
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (69.09%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F033352	Metagenome / Metatranscriptome	177	N
F041639	Metagenome	159	N
F042872	Metagenome	157	Y
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_100003411	F041639	N/A	MGRRLNTAILAQAAATGVGLRQARRQLEKGQAVATAKPMKPIAGIGLDGEIDRLESLAATLGEAAKEASGPERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRPAAEIQKEVENEVGQVMRQVQAAL
Ga0209088_1000034114	F007911	AGGAG	MPAVTMLDRLIEAAFQELLTATVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTRKCSKVLQAFYDSSPLATRLNATTAIGSARCYNAKVDSIEPEADDEERTMRRTYKLAVIAQPNSIAS
Ga0209088_1000034116	F015449	GAG	MVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFNTGGDQDAKAEMERTWTDMKSEPEAAIRYVRAALENRETLLSLMKRAEPILSIKRGSQTLLISERASPELKRAMIKKL
Ga0209088_1000034117	F057981	N/A	MSEEALLQELDNSLISPDRYFKNQKLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKRAIRLAWDKDAFREKLMDWIAEMSEEDRNTASLMCSSILSEANKARVNVIPSAIAAPPGNA
Ga0209088_1000034128	F006891	AGG	VGADRGRSRKRKAMSTDQVAELSERLSLVRESIARIETRQSVILDLLERSQASLGEYHGRLTHMEREAHTIKTKLWLVALVSGAVFSTIWELIKRRISL
Ga0209088_1000034136	F042872	N/A	MNVPSIINQIKEGDRTVGSNPTPSDTYHYNDLRRNGNTAVITEPKKAHYQQLNLNSRGGYDLTPEAFVYHPNPAVCRMWHAQHEASK
Ga0209088_1000034141	F033352	N/A	MTDLTKFRMIENIEVMACRNSAERVVKAINRGDLAQAKDLARKHEIAWHLADREFQDLNQPHRNNDFCDDE
Ga0209088_1000034151	F007747	AGGAG	MKDLGKITFGKSRPAPKQVLVDVTYDARTAKALHAFGLKQLKKDQEAVIEYVIKKALEGLVESKKYSK