Scaffold Ga0209088

Basic Information
Taxon OID	3300027763 Open in IMG/M
Scaffold ID	Ga0209088_10000292 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027763 Open in IMG/M

Scaffold ID

Ga0209088_10000292 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36570
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (64.18%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

36570

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (64.18%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001459	Metagenome / Metatranscriptome	690	Y
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F037193	Metagenome / Metatranscriptome	168	Y
F102823	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000029211	F012569	N/A	MSRALDKFQAQYGFSVGTQGTATAGYWAIQMLENTTFSAISGKYDGTLTGITIGSGNIIYGEFNSYTAGTGKVIGYIAG
Ga0209088_1000029212	F010603	AGGAG	MANEFVRSTRKAKGKALRFDTQGFTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0209088_1000029213	F004760	AGGAGG	VRWPRRPTRRLTANMPVYQYLDTRKKSIVELDRSVAERDNVPKHLKRFTVPQRLALVGVGEPLDNPLGANKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD
Ga0209088_1000029217	F001459	GGA	MRKLRAILAFIRHQEWVDEPKWEAEDERALTGFLGTLTGKKLSLILLNLTLRQNASAVEKKADSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGADEPTVN
Ga0209088_1000029240	F102823	N/A	VSALLDWIIVGAGLAIGRLLVAIAVITIGIAILAAFFIYEEKTK
Ga0209088_1000029242	F037193	AGGAG	MKTHNEIAMQVKKYWDNDGSRWKLWVEAGGFRTEIFCYDTTDANAYAKCIRELVSHAYQLQSV
Ga0209088_1000029243	F002826	GGA	MEVEAKNRLRWARDILLSAREKLAVERDRANHGHAIDIIQIIALVDAAALVCKEITGENNENTQRDSNAG
Ga0209088_1000029257	F002009	GGA	MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETGVDHLERALVRSLFVLAQIKKEIPRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209088_10000292

Overview

Ecosystem & Geography

Associated Families

Sequences