Scaffold Ga0209088_10000268

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000268
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37683
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (76.36%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F004010	Metagenome / Metatranscriptome	457	Y
F039527	Metagenome / Metatranscriptome	163	N
F056556	Metagenome	137	N
F068578	Metagenome / Metatranscriptome	124	N
F078641	Metagenome / Metatranscriptome	116	N
F083891	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000026815	F083891	GAGG	VSRAVECPHCRQEVPVALFASRIGKVRSEAKAKASIANGKKGGAPKGNRNWAGKELQVASFRPIKLD
Ga0209088_1000026816	F039527	GAGG	MKYLKFWRQHDRTNPTHALRDPVHRVYVENVLEETMNNYDDREEGALTFEQMVPGKYYRYNRDYGICEIMESASNRPKVLRYLNRGGGLLGGNGDLFEIDMTDRLLAVLKERRDKQIEFIDEMRTW
Ga0209088_1000026825	F004010	AGGA	MPSGKNVSKNMRELMKDNKKKGKERGAGGKARSFEQMVAIALNAAGKSKNR
Ga0209088_1000026831	F056556	AGGAGG	MKRQIVTVSCQLPEWFEKHSLPRMEESSKRWDANLVVIKPEKPIGLLAKMSLVDAVQNADRTLFVDSDVLISRECVNPFETFPQGHFYACADAPHGDQLHWGRANEMILSQALLGSVKWTQGYFNTGVMVCDKQHAGAWANFVYAPFAFPEQTFTNYRARMLGYSVRFLSWEWNAMEINTPKDKKQSDGFMPHAAGIYGDARAKWIEEMDKVLP
Ga0209088_1000026835	F068578	GGA	MEAIDSLGTAVRELQEGLPVKDHTGPTIEDVATYASGVIRKIMNRGSNKSRFGEWFHKNSLRYNSDRAIAHMTRAMQQIDGNVSSPDGLGETCIDHLERALVRAVFTLYKAKEGKIR
Ga0209088_1000026850	F000635	AGG	MTLTEIAQYAGEKIGKTDADTLTFLQKSASLNYRRVWNFAPWRESVTSSTYSVSTSTRTVTLGSLVENPLSVAYGDSELLAVDLQTIISQDADLLDNNRTGTPTQYYFTGRGTSGTAQIDLYPLLNTSSTTPLKVVEKNQCLTRSNYVVDFPPASNAITDELRLPHVQHVVLALTHADALERERQYAKAQAVVATANADLSAMAQYEMSQVGGIKVITPSSLGEFSILDISV
Ga0209088_1000026853	F078641	AGG	MSDDQVWSIEVKLARMEERQVQLYKMVETSLSKYADVVNRVSALEHFRTKALAIAGIIGLICSIAWDMLKNRLGN