Scaffold Ga0209088_10000257

Overview

Basic Information

• Taxon OID: 3300027763
• Scaffold ID: Ga0209088_10000257
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38603
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F011669	Metagenome	288	Y
F014954	Metagenome	258	Y
F018719	Metagenome	233	Y
F033353	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209088_1000025731	F018719	N/A	MTPTFNTWDRATLDKFALEAYLRLQQQQDQLEQLRGDLKDAIEAYRLRNLRD
Ga0209088_1000025739	F011669	AGG	MNDNDDYELANWMHLIATCILALFAVTGIAGLAGFLWGML
Ga0209088_1000025740	F004450	GGAGG	MNWVAAVLVALVMSAAYLLDGPSEHDARVDTAEEKIQRLCGENAGWKLLEDGSVQCYTHRGLKTRKVTL
Ga0209088_1000025750	F033353	GGAGG	VRTEYHNDEFMITSEVMPTDDGRWRVQLRDDDSGQTVGPARFYDNQADALAYAEKLCS
Ga0209088_1000025752	F014954	GGAG	MKTITLNRARYTVRDDRHSFLSDILKLTGKHKPIRPRGGDRRLYPTDGDVSTAAYVQEYYALNSNRKLFKNDAAPYGDANLAGFYENLSDRLTVPEGEDSLEVCDDVLA